Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVELSEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGMRQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTVDEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLLDERSPKVLPPLPIQKRWEKWNEIEGRKA |
| 4YMW Chain:J ((1-239)) | -----MIFVNDVYKNF----GSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCI---NLLEEPTKGEVFIDGVK-INNGKVNINKVR-QKVGMVFQH--FNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQ---YPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQL-ANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKIL---------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143380 for 1966 contacts (-72.9/contact) +
2D Compatibility (PS) -25735 + (NN) -9566 + (LL) 5116
1D Compatibility (HY) -18800 + (ID) 4200
Total energy: -196565.0 ( -99.98 by residue)
QMean score : 0.453
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