Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTG----PTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIV-WLAGVLFVDVAGAVWLASY--TNIPLDKSLLQNLVFIPGDTIKAIIAAVVAVKYKDSFFLTEK
2ZB5 Chain:A ((266-383))
-----------------------------------------------------GVLSVDLSLTVELKIKIASGFGPLITHGSGMDLYKSNHNNVYWLTIPPMKNLALGVINTLEWIPRFKVSPYLFTVPIKEAGGDCHAPTYLP---DGDVKLSSNLVILPGQDLQYVLATYDTSRVEHAVVYYVY
General information:
TITO was launched using:
RESULT:
Template:
2ZB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65149 for 616 contacts (-105.8/contact) +
2D Compatibility (PS) -11494 + (NN) 3742 + (LL) 5068
1D Compatibility (HY) -6000 + (ID) 1450
Total energy: -75283.0 ( -122.21 by residue)
QMean score : -0.001
(partial model without unconserved sides chains):
PDB file :
Tito_2ZB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZB5-query.scw
PDB file :
Tito_Scwrl_2ZB5.pdb
: