Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
4FX2 Chain:A ((1-126))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
4FX2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75306 for 988 contacts (-76.2/contact) +
2D Compatibility (PS) -13345 + (NN) -5300 + (LL) 528
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -102023.0 ( -103.26 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4FX2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FX2-query.scw
PDB file :
Tito_Scwrl_4FX2.pdb
: