Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAEL--------EAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENAP-EAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTL-----DKSYDFVFMDSAKSKYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVRRGQRTIYRGLQRLFDSTL-RHPDLTATLVPLGDGLLMIRKNAEHIVLED
3TR6 Chain:A ((14-225))
--------------------ELYQYLLQVSLREPPLLAELREETTRSFSTYAMQ-----TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQ------LIRLFNQKVYKDERVDMILIPIGDGLTLARKKS-------
General information:
TITO was launched using:
RESULT:
Template:
3TR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125511 for 1590 contacts (-78.9/contact) +
2D Compatibility (PS) -21752 + (NN) -14212 + (LL) 2804
1D Compatibility (HY) -14000 + (ID) 3100
Total energy: -175771.0 ( -110.55 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3TR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR6-query.scw
PDB file :
Tito_Scwrl_3TR6.pdb
: