Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGY-VEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKP-VFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDL----PIQPSYVLASLDEWTFNEG
4JDP Chain:A ((28-280))
---KGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREKPNAKVFTTGEEGLIEELRLAGLEIVDYDEAEYLVVGSNRKINFELMTKALRACLRGIRYIATNPDRIFPAEDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLKDMVEALE
General information:
TITO was launched using:
RESULT:
Template:
4JDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170027 for 2174 contacts (-78.2/contact) +
2D Compatibility (PS) -26962 + (NN) -14416 + (LL) 444
1D Compatibility (HY) -16800 + (ID) 4400
Total energy: -232161.0 ( -106.79 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_4JDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JDP-query.scw
PDB file :
Tito_Scwrl_4JDP.pdb
: