Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQSNHRYHGPLIEFEIEYSYIKIFPWIGLFISCIGLYASNFGDPLGFIKFIFSVCIFVNLVSIIISLFLKKYLIF
2KDR Chain:X ((1-28))
-SDAAARVTAILSSLTVTQLLRRLHQWIS-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1000 for 106 contacts (9.4/contact) +
2D Compatibility (PS) -2698 + (NN) 2248 + (LL) 4508
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 3258.0 ( 30.74 by residue)
QMean score : -0.284
(partial model without unconserved sides chains):
PDB file :
Tito_2KDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KDR-query.scw
PDB file :
Tito_Scwrl_2KDR.pdb
: