Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
1AFO Chain:A ((73-90))
---------------------------ITLIIFGVMAGVIGTILL---
General information:
TITO was launched using:
RESULT:
Template:
1AFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3485 for 62 contacts (-56.2/contact) +
2D Compatibility (PS) -1666 + (NN) 1095 + (LL) 2104
1D Compatibility (HY) -1200 + (ID) 100
Total energy: -3252.0 ( -52.45 by residue)
QMean score : 0.032
(partial model without unconserved sides chains):
PDB file :
Tito_1AFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFO-query.scw
PDB file :
Tito_Scwrl_1AFO.pdb
: