Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGR-RVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGA-FKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK |
1M0S Chain:A ((5-199)) | --EMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIKDKIQG----AVAASKESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAALGGSPEYREG----VVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVID |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M0S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49961 for 1648 contacts (-30.3/contact) +
2D Compatibility (PS) -20761 + (NN) -7329 + (LL) 768
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -95483.0 ( -57.94 by residue)
QMean score : 0.531
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