Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNRKDDHIKYA----LKYQSPYNSFDDIELIHSSLPKYNVNDIDLSTHFAGQSFEFPFYINAMTGGSEKGKAVNHKLAQVAQATGIVMATGSYSAALKNDE-DDSYPTT-DLYPDLKLATNIGLDK-----PLPAAESTVKAMNPIFLQVHVNVMQELLMPEGEREFHMWR-SHLKEYVDNIQCPLILKEVGFGMDLQSIKDAYDIGITTVDISGRGGTSFAYIE--------NQRGRDRSYLNTWGQTTAQSLINAQSMMDKMDILASGGIRHPLDMVKCLVLGAKAVGLSRTVLELVERYPVDDVIAILNSWKE---DLRMIMCALNCKKITDLRQVNYILYGQLKEANAK |
| 3VKJ Chain:A ((4-349)) | IVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVL----KSAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGKLKEWAEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192322 for 2892 contacts (-66.5/contact) +
2D Compatibility (PS) -34710 + (NN) -10712 + (LL) 576
1D Compatibility (HY) -20000 + (ID) 4550
Total energy: -261718.0 ( -90.50 by residue)
QMean score : 0.486
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