Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILTLFPEMF-APLEHSIVGKAKERGLLEINYHNFRE-NAEKSRHVDDEPYGGGQGMLLRAQPIFDTIDKIDAQKAR---VILLDPAGRTFDQDFAEELSKEDELIFICGHYEGYDER-IKSLVTDEVSLGDFVLTGGELAAMTMVDATVRLIPEVIGKETSHQDDSFSSGLLEYPQYTRPYDYLGMTVPDVLMSGHHENIRKWRLEQSLRKTLERRPDLLENYAMTDEERLILEKIKTEIERTDTVNEQNNL
1P9P Chain:A ((7-249))
MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLG-----------EGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQ----------
General information:
TITO was launched using:
RESULT:
Template:
1P9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131787 for 1591 contacts (-82.8/contact) +
2D Compatibility (PS) -24131 + (NN) -7964 + (LL) 1052
1D Compatibility (HY) -22800 + (ID) 5700
Total energy: -191330.0 ( -120.26 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1P9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P9P-query.scw
PDB file :
Tito_Scwrl_1P9P.pdb
: