Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQLEIRKLSLQIGEVPVLRDFSCKIGMGESLTIIGESGSGKTLLAKLLVGHIPQGMTVRGNIFFKGVDL--GKLTVKQWQKLRGRDIAYLVQNPMSMFNPFQKIEAHILETILSHEKCSKRVALSKALEWMKRLNLDDAISLLKKYPFELSGGMLQRIMLATILSLDPQVIILDEPTSAVDCHNCSTISAILQELQNNGKTLITVTHDYQLARDLGGQLLVISEGEVVEQGQTQTILSNPQHNYTKALTVQMEYEGDILNVGL
4YMW Chain:J ((10-235))
-----------NFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCI--NLLEEPT-KGEVFIDGVKINNGKVNINKVRQKVG-----MVFQHFNLFPHLTAIENITLAPV-KVKKMNKKEAEELAVDLLAKVGLLDKKD---QYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKIL----------
General information:
TITO was launched using:
RESULT:
Template:
4YMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133596 for 1768 contacts (-75.6/contact) +
2D Compatibility (PS) -24669 + (NN) -18099 + (LL) 3500
1D Compatibility (HY) -22000 + (ID) 3450
Total energy: -198314.0 ( -112.17 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4YMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMW-query.scw
PDB file :
Tito_Scwrl_4YMW.pdb
: