Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLS--EKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1LMH Chain:A ((6-174))
-----------------DIIRDGHPTLRQKAAELELPLTKEEKETLIAMR--EFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIP--DDGSGK------SYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDHPLQPHTDAVEVH
General information:
TITO was launched using:
RESULT:
Template:
1LMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37155 for 1268 contacts (-29.3/contact) +
2D Compatibility (PS) -17527 + (NN) -5291 + (LL) 2192
1D Compatibility (HY) -18800 + (ID) 4650
Total energy: -81231.0 ( -64.06 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1LMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMH-query.scw
PDB file :
Tito_Scwrl_1LMH.pdb
: