Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQ------TAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTL-GTSFISSLKAPLPQVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEF---NKLAALGEFDKITEMAKQYKIQLNLN
3VCR Chain:A ((15-210))
--------------LIPVIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAV---PEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKE-YLGLPNVICAGGSWLTESKLLIEGDWNEVTRRASEIVKLSDI-
General information:
TITO was launched using:
RESULT:
Template:
3VCR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141561 for 1487 contacts (-95.2/contact) +
2D Compatibility (PS) -20172 + (NN) -9608 + (LL) 1924
1D Compatibility (HY) -12400 + (ID) 2900
Total energy: -184717.0 ( -124.22 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3VCR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCR-query.scw
PDB file :
Tito_Scwrl_3VCR.pdb
: