Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAH----IGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
2E9C Chain:A ((14-240))
-----------------PAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-------------------LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPV----DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------
General information:
TITO was launched using:
RESULT:
Template:
2E9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100147 for 1510 contacts (-66.3/contact) +
2D Compatibility (PS) -22332 + (NN) -12130 + (LL) 3444
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -150915.0 ( -99.94 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2E9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E9C-query.scw
PDB file :
Tito_Scwrl_2E9C.pdb
: