Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MEPIFIIGIILGLVILLFLSGSAAKPLKWI----GITAVKFVAGALLLVCVNMFGGSLGIHVPINLVTTAISGILGIPGIAALVVIKQFII
2LVC Chain:A ((1-90))
HMPVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVEESDFV-------VLENEGPHRRLVLP-ATQPSDGGEFQCVAGDECAYFTVTI--
General information:
TITO was launched using:
RESULT:
Template:
2LVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77500 for 471 contacts (-164.5/contact) +
2D Compatibility (PS) -8602 + (NN) -60 + (LL) 1448
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -88114.0 ( -187.08 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_2LVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVC-query.scw
PDB file :
Tito_Scwrl_2LVC.pdb
: