Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKELFDTVINLEEQIGSLYRQLGDLKQHIGEMIEENHHLQLENKHLRKRLDDTT--QQIEKFKADKK--------ESKTQKTEQTDIGEGYDNLARLYQEGFHICNVHYGSVRKEDCLFCLSFLNKK
4WD9 Chain:A ((203-336))
-----------------GDEYRELSE--QYLGSLIVNHYLISNLQKDLLSDFSWNTFLTKVEAIDEDKKYIIPLKKVQKFIQEYSEIEIGEGIEKLKEIYQE---------------------------
General information:
TITO was launched using:
RESULT:
Template:
4WD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 18434 for 302 contacts (61.0/contact) +
2D Compatibility (PS) -7768 + (NN) -1783 + (LL) 3532
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: 6065.0 ( 20.08 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_4WD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WD9-query.scw
PDB file :
Tito_Scwrl_4WD9.pdb
: