Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA
2D3O Chain:R ((5-89))
-----DILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL-AEGQSIE----
General information:
TITO was launched using:
RESULT:
Template:
2D3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7112 for 511 contacts (-13.9/contact) +
2D Compatibility (PS) -9015 + (NN) 1008 + (LL) 792
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -23127.0 ( -45.26 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_2D3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D3O-query.scw
PDB file :
Tito_Scwrl_2D3O.pdb
: