Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTLTNDDKRFTSLP-KEVLSQALGIQDRYPVVILKDDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRR-----------IGPLGEQLILHHFL
1MK4 Chain:A ((1-156))
----MDIRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHF--QD-TSFITSEHNSMTGFLIGFQS-QS------DPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQR--GCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQDRVLFVKNI
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107791 for 987 contacts (-109.2/contact) +
2D Compatibility (PS) -15331 + (NN) -4775 + (LL) 768
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -130029.0 ( -131.74 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: