Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNQKEWESVSKKGLMKPGGTSIVKAAGCMGCWASKSIAMTRVCALPHPAMRAI
1JDL Chain:A ((7-23))
-------------------KGEAVFK--KCMACHRVGP-----------------
General information:
TITO was launched using:
RESULT:
Template:
1JDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2766 for 57 contacts (-48.5/contact) +
2D Compatibility (PS) -1849 + (NN) -693 + (LL) 3368
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -3790.0 ( -66.49 by residue)
QMean score : -0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1JDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDL-query.scw
PDB file :
Tito_Scwrl_1JDL.pdb
: