Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPFLIMLLFVGAIGFQVSFVSRSTTWDMSIAGWVLTGVFILYTAFGLFSNRLPSQMADIIWL-YGTATSFSKVVYSVLF----FSVTWKALLWIISAIFGDVLIVLLSGDHINLLGRSIIFVGLFFIAEVWLMSVSCA-RTVKKMKRVYVLVFLLMLGIYSICLYRFFFLQHSSGIWESIARFISGVGLVFDTLSPLYVVVFIGII---------TVSFMTIAFTSRQVEMKESLVKEAEFWEEFQERQFGSGQIIQKPKTTW--WGLQGLNGIWSFLWLELLLFKKYLFFHSIHTVMLSGVFYVVIFMYPEWFYLLFFLIVSAVMLSSYYSGIVRHSQSGTLHLFPGALWKKIIILELTNTVWLYILYCVSITFMAVGNLVYWYIYGLGIYIWFMTIRLFAFTHTN-RNDIKLSLPQYYKSFFMALGLSGICLYVIHLLTADWYTLVVVVCIGSLSWCLFYRFR |
5DJ4 Chain:A ((66-480)) | ------------------------------------------GLEALMSSGRVDNLAVVMGLHPDYFTSFWRLHYLLLHTDGPLASSWRHYIAIMAAARHQC--SYLVGSHMAEFLQT-------GGDPEWLLGLHRAPEKLRKLSEINKLLAHRPWLITKEHIQALL--KTGEHTW-SLAELIQALVLLTHCHSLSSFVFGCGILPEGDPPSEQSSPRDVEALMERMQQLQESEEMESRFELEKSESLPDMLCFVEDPTFGYEDFTRRGAQAPPTFR------AQDYTWED--------HGYSLIQRLYPEGGQLLDEKFQAAYSLT--YNTIAMHSGVDT-SVLRRAIWNYIHCV----FGIRYDDYDYGEVNQLLERNLKVYIKTVACYPEKTTRRMYNLFWRHFRHSEKV----HVNLLLLEARMQAALLYALRAITRYMT-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5DJ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -448387 for 2810 contacts (-159.6/contact) +
2D Compatibility (PS) -34722 + (NN) 3677 + (LL) 10204
1D Compatibility (HY) -7200 + (ID) 3450
Total energy: -479878.0 ( -170.78 by residue)
QMean score : 0.280
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