Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK-----NQSYKIFGNIPYNISTDIIRKIV--FDSIADEIYLIVEYGFAKRLL---NTKRSLALFLMAEVDISILSM--VPREYFHPKPKVNSSLIRLNRKKSRISH--KDKQKYNYFVMKWVNKEYKKIFTKNQFNN-----SLKHAGIDD---LNNISFEQFLSLFNSYKLFNK
4ADV Chain:V ((17-262))---------QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIAD-MHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRL-VPHATMPHPVKDVRVLSRITTEAFNQRRKTI--RNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMAN-------


General information:
TITO was launched using:
RESULT:

Template: 4ADV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain V - contact count / total energy / energy per contact / energy per residue : 1056 -13477 -12.76 -60.17
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain V : 0.76

3D Compatibility (PKB) : -12.76
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.548

(partial model without unconserved sides chains):
PDB file : Tito_4ADV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ADV-query.scw
PDB file : Tito_Scwrl_4ADV.pdb: