Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA------DAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK
1UBU Chain:S ((89-161))
-----------------------------------------------------------------------------------VANHTMLDICSRIL---PKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTI------
General information:
TITO was launched using:
RESULT:
Template:
1UBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42070 for 431 contacts (-97.6/contact) +
2D Compatibility (PS) -6801 + (NN) 111 + (LL) 5548
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -48462.0 ( -112.44 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_1UBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UBU-query.scw
PDB file :
Tito_Scwrl_1UBU.pdb
: