Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MSNANFSILVDFAAGGLVLA---SVLIVWRRDLRAIV---RLLAWQG---AALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIA-LFVMTTRLHAVSQA------AGFLMLDNGIAATAFL-----LTAGVPLIVELGASLDVLFAVIVIGVLTGRLRRIF-GDADLDKLRELRD-- |
| 4NDO Chain:A ((32-276)) | KRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195928 for 1840 contacts (-106.5/contact) +
2D Compatibility (PS) -22904 + (NN) -3517 + (LL) 0
1D Compatibility (HY) 0 + (ID) 1750
Total energy: -224099.0 ( -121.79 by residue)
QMean score : 0.217
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