Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRSDTLATKLPWSDWLSRQRWYAGRNRELATVKPGVVVA-LRHNLDLVLVDVTYTDGATERYQVLVGWDFEPASEYGTKAAIGVA----DDRTGFDALYDVAGPQFLLSLIVSSAVCGTSTGEVTFTREPDVELPFAAQPRVCDAEQSNTSVIFDRRAILKVFRRVSSGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEANAAEGWAMATASVRDLFAEGDLYAHEVGGDFAGESYRLGEAVASVHATLADSLGTAQATFPVDRMLARLSSTVAVVPELREYAPTIEQQFQKLAAEAITVQRVHGDLHLGQVLRTPESWLLIDFEGEPGQPLDERRAPDSPLRDVAGVLRSFEYAAYGPLVDQA----TDKQLAARAREWVERNRAAFCDGYAVASGIDPRDSALLLGAYELDKAVYETGYETRHRPGWLPIPLRSIARLTAS |
4U98 Chain:A ((2-441)) | ---------TLAFGDWIVHRRWYAGRSRELVSAEPAVVTPLRD-DLDHILLDVTYTDGTVERYQLVVRWADSPVAGFGEAATIGTALGPQGERIAYDALFDPDAARHLLRLVDASATVA----DLRFTREPGATLPLYAPPKVSSAEQSNTSVIFGKDAMLKVFRRVTPGINPDIELNRVLAQAGNRHVARLLGSFETSWAGPG---TDRCALGMVTAFAANSAEGWDMATASAREMFADVVG------SDFADESYRLGNAVASVHATLAEALGTSTEPFPVDTVLARLQSAARSAPELAGRAAAVEERYRRLDGRAITVQRVHGDLHLGQVLRTPDDWLLIDFEGEPGQPLDERRRPDSPLRDVAGVLRSFEYAAYQKLVELAPEQDADGRLADRARNWVDRNSAAFCAGYAAVAGDDPRRDGDVLAAYELDKAVYEAAYEARFRPSWLPIPMRSIDRILG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209748 for 3540 contacts (-59.3/contact) +
2D Compatibility (PS) -46142 + (NN) -16773 + (LL) 840
1D Compatibility (HY) -38000 + (ID) 13050
Total energy: -322873.0 ( -91.21 by residue)
QMean score : 0.451
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