Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIALPALEGVEHRHVDVAEGVRIHVADAGPADGPAVMLVHGFPQNWWEWRDLIGPLAADGNRVLCPDLRGAGWSSAPR--SRYTKTEMADDLAAVLDGLGVAKVKLVAHDWGGPVAFIMMLRHPEKVTGFFGVNTVAPWVKRDLGM-----LRNMWRFWYQIPMSLPVIGPRVISDPKGRYFRLLTGWVGGGFRVPDDDVR----------LYLDCMREPGHAEAGSRWYRTFQTREM--------LRWLRGEYND---------ARVDVPVRWLHGTGDPVITPDLLDGYAERASDFEVELVDGVGHWIVEQRPELVLDRVRAFLAAGTEQRD |
| 3KOO Chain:A ((237-534)) | ---------MSHGYVTVKPRVRLHFVELG--SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT--PFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSL-------FRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KOO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158593 for 2158 contacts (-73.5/contact) +
2D Compatibility (PS) -27507 + (NN) -6499 + (LL) 2256
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -211893.0 ( -98.19 by residue)
QMean score : 0.413
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