Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHTQVHTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
1M4G Chain:B ((6-181))
-----HTARLVHTADLDSETRQDIRQMVTGAFAGDFTETDWEHTLGGMHALIWHHGAIIAHAAVIQRRLIYRGNALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSSSARARRLYASRGWLPWHGPTSVLAPTGPVRTPDDDGTVFVLPIDISLDTSAELMCDWRAGDVW
General information:
TITO was launched using:
RESULT:
Template:
1M4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135450 for 1352 contacts (-100.2/contact) +
2D Compatibility (PS) -18940 + (NN) -8545 + (LL) 616
1D Compatibility (HY) -23600 + (ID) 8800
Total energy: -194719.0 ( -144.02 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1M4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4G-query.scw
PDB file :
Tito_Scwrl_1M4G.pdb
: