Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSAMARAIRSGDDAEVADGLTRREHDILAFERQWWKFAGVKEEAIKELFSMSATRYYQVLNALVDRPEALAADPMLVKRLRRLRASRQKARAARRLGFEVT
2LNB Chain:A ((14-62))
-----------------PGREGHLEQRILQVLTE--AGSPVKLAQLVKECQAPKRELNQVLYRMKKEL----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14995 for 279 contacts (-53.7/contact) +
2D Compatibility (PS) -5504 + (NN) -2903 + (LL) 5052
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -20350.0 ( -72.94 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2LNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNB-query.scw
PDB file :
Tito_Scwrl_2LNB.pdb
: