Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
3H8K Chain:B ((573-600))
---WSADERQRMLVQRKDELLQQARKRFLNK--
General information:
TITO was launched using:
RESULT:
Template:
3H8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9624 for 107 contacts (89.9/contact) +
2D Compatibility (PS) -3073 + (NN) -2024 + (LL) -100
1D Compatibility (HY) -400 + (ID) 300
Total energy: 3727.0 ( 34.83 by residue)
QMean score : 0.892
(partial model without unconserved sides chains):
PDB file :
Tito_3H8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H8K-query.scw
PDB file :
Tito_Scwrl_3H8K.pdb
: