Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRGELWFAATPGGDRPVLVLTRDPVA-DRIGAVVVVALTRTRRGLVSELELTAVENRVPSDCVVNFDNIHTLPRTAFRRRITRLSPARLHEACQTLRASTGC
2VNH Chain:A ((123-164))
-----LWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRT----VAELE----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VNH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18353 for 217 contacts (-84.6/contact) +
2D Compatibility (PS) -4572 + (NN) -2408 + (LL) 4212
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -25221.0 ( -116.23 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2VNH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VNH-query.scw
PDB file :
Tito_Scwrl_2VNH.pdb
: