Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRT--DLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNN--NWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVK--NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS |
1RHD Chain:A ((42-278)) | ----------------------------EARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYNGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP-SRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRA----QGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTENGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAY-LCGKPDVAIYDGSWFEW------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51454 for 1767 contacts (-29.1/contact) +
2D Compatibility (PS) -24688 + (NN) -11988 + (LL) 3144
1D Compatibility (HY) -14800 + (ID) 3550
Total energy: -103336.0 ( -58.48 by residue)
QMean score : 0.426
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