Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNS----QVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
4FZW Chain:A ((7-258))
-----LIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAAT----DTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFKGR
General information:
TITO was launched using:
RESULT:
Template:
4FZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116075 for 1991 contacts (-58.3/contact) +
2D Compatibility (PS) -27194 + (NN) -11183 + (LL) 636
1D Compatibility (HY) -19200 + (ID) 5900
Total energy: -178916.0 ( -89.86 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_4FZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FZW-query.scw
PDB file :
Tito_Scwrl_4FZW.pdb
: