Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFA-AARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2OHV Chain:A ((5-253))
------PIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAP-----KKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPL-VGKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQ-AVEHRFFTTANPEIFQEIASIWL----------------
General information:
TITO was launched using:
RESULT:
Template:
2OHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -229729 for 2156 contacts (-106.6/contact) +
2D Compatibility (PS) -26702 + (NN) -11341 + (LL) 568
1D Compatibility (HY) -24400 + (ID) 4400
Total energy: -296004.0 ( -137.29 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_2OHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OHV-query.scw
PDB file :
Tito_Scwrl_2OHV.pdb
: