Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRTPRRHCRRIAVLAAVSIAATVVAGCSSGSKPSGGPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNVKLTLGGSDIDADFVVFDGILYATLTP-NQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQETGDHQLAQAQLDRG-SGNSVQMTLSKWGEKVQVTKPPVS |
3M4W Chain:A ((2-177)) | --------------------------------------PASGALLQQMNLASQS-LNYELSFISINK--QG-VESLRYRHARLDNRPLAQLLQM-DG--PRREVVQRGNEISYFEPGLEPFT-LNGDYI-VDSLPSLIY-TDFKRLSPY-YDFISVGRTRIADRLCEVIRVVARDG------------TRYSYIVWMDTES-KLPMRVDLLDRDGETLEQFRVIAFNVNQD------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9080 for 1192 contacts (-7.6/contact) +
2D Compatibility (PS) -17588 + (NN) -3515 + (LL) 3452
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -30831.0 ( -25.86 by residue)
QMean score : 0.195
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