Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAPAICNTTETVHGIATSLGAVARQASLPRIVGTVVGITVLVVVALL----VPVPTAVELRDWAKSLGAWF----PLAFL--------LVHTVVTVPPFPRTAFTLAAGLL-------FGSVVGVF--------------------IAVVGSTASAV--------IAMLLVRATGWQLNSL--VRRRAINRLDERLRERGWLAILSLRLIPVVPFAAINYAAGASGVRILS-----------FAWATLAGLLPGTAAVVIL----GDAFAGSGSPLLILVSVCT----GALGLTGL-VYEIRNYRRQHRRMPGYDDPVREPALI---------------------------------------------------- |
| 1YT3 Chain:A ((1-375)) | MNYQMI-TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171850 for 1636 contacts (-105.0/contact) +
2D Compatibility (PS) -25140 + (NN) 2757 + (LL) 200
1D Compatibility (HY) -13200 + (ID) 2650
Total energy: -209883.0 ( -128.29 by residue)
QMean score : 0.121
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