Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHREN---AHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTI-RARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD |
| 3M6A Chain:A ((88-252)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG-------GRIIQGMKKAG-KLNPVFLLDEIDKMS-----AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATI---PGPLRDRMEIINIAG--------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3M6A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -39685 for 890 contacts (-44.6/contact) +
2D Compatibility (PS) -14111 + (NN) -4793 + (LL) 20840
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -40549.0 ( -45.56 by residue)
QMean score : 0.183
|
|
|