Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSGHPVTLDDLPLRADLRGKAPY-GAPQLAVP--VRLNTNENPHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVP-SYSMHPIISDGTHTEWIEASRANDFGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPGIAIV--DEAYGEFSSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSS-VTQAAARA-------ALRHSDDTLSSVAALIAERERVTTSLNDMGF--RVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVG----IPGYLRATTGLAEENDAFLRASARIATDLVPVTRSPVGAP |
| 1GEX Chain:A ((5-350)) | --------TITDLA-RENVRNLTPYQ--------GDVWLNANEYPTAVEFQLTQQT----------LNRYPECQPKAVIENYAQY----AGVK--PEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQ-GISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP-HLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRE------RVAQIIAEREYLIAALKEIPCVEQVFDSETNYIL-ARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDA------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GEX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159529 for 2547 contacts (-62.6/contact) +
2D Compatibility (PS) -35290 + (NN) -24807 + (LL) 3712
1D Compatibility (HY) -28000 + (ID) 5900
Total energy: -249814.0 ( -98.08 by residue)
QMean score : 0.476
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