Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGS-AVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAV-GLDVQIID-GEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIA---SGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
5AHF Chain:A ((1-239))
----MIIPALNLIDGTVVRL-------QRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDIS--------NVSLYEEVCARY--PQIAFQSSGGIGDIDD---IAALRGTGVRGVIVGRALLEGKFTVKEAI-----
General information:
TITO was launched using:
RESULT:
Template:
5AHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128611 for 1697 contacts (-75.8/contact) +
2D Compatibility (PS) -23850 + (NN) -12678 + (LL) 1152
1D Compatibility (HY) -24400 + (ID) 3900
Total energy: -192287.0 ( -113.31 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_5AHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHF-query.scw
PDB file :
Tito_Scwrl_5AHF.pdb
: