Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRYEVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQ-------IVSRYGATVIPNINAAIEVLGTGTDYRF
1WUD Chain:A ((539-606))
------------------------------------------------------LRKLRKSIADESNVPPYVVFNDATLIEMAE----QMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGD--------
General information:
TITO was launched using:
RESULT:
Template:
1WUD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28651 for 309 contacts (-92.7/contact) +
2D Compatibility (PS) -5323 + (NN) 5076 + (LL) 4572
1D Compatibility (HY) 400 + (ID) 200
Total energy: -24126.0 ( -78.08 by residue)
QMean score : -0.118
(partial model without unconserved sides chains):
PDB file :
Tito_1WUD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WUD-query.scw
PDB file :
Tito_Scwrl_1WUD.pdb
: