Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
3R3B Chain:A ((16-148))
--PDVASHYPVAYEQTLDGTVGFVIDEMTPERATASVEVTDTLRARWGLVHGGAYCALAEMLATEATVAVV--HEKGMMAVGQSNHTSFFRPVKEGHVRAEAVRIHAGSTTWFWDVSLRDDAGRLCA---VSSMSIAVRP
General information:
TITO was launched using:
RESULT:
Template:
3R3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76377 for 1020 contacts (-74.9/contact) +
2D Compatibility (PS) -13922 + (NN) -7667 + (LL) 268
1D Compatibility (HY) -8400 + (ID) 2250
Total energy: -108348.0 ( -106.22 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3R3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R3B-query.scw
PDB file :
Tito_Scwrl_3R3B.pdb
: