Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRELVTTAAITGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWERFIFGRGPSGQAEACHFPPPNQFPP-AETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFPPEP
2VG4 Chain:A ((18-57))
-------------------------------------------------------------------PAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKA-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8004 for 184 contacts (43.5/contact) +
2D Compatibility (PS) -4243 + (NN) -8545 + (LL) 3044
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -3490.0 ( -18.97 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_2VG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG4-query.scw
PDB file :
Tito_Scwrl_2VG4.pdb
: