Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSPRRRTLDTAKLA---GLTVNEVTGLLAEWDYGSYEGLTTPQIRESEPDWLVWTHGCPA--------GESVAQVNDRADSAVALALEHMSSRDVLFVSHGHFSRAVITRWVQLPLAE-GSRFAMPTASIGICGFEHGVRQLAVLGLTGHPQPIAAG
1EBB Chain:A ((4-200))
-------LYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVEL--AAIYTSTSGRALETAEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDP--IAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSH-------
General information:
TITO was launched using:
RESULT:
Template:
1EBB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86561 for 1446 contacts (-59.9/contact) +
2D Compatibility (PS) -19928 + (NN) -6153 + (LL) 480
1D Compatibility (HY) -8400 + (ID) 2950
Total energy: -123512.0 ( -85.42 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1EBB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EBB-query.scw
PDB file :
Tito_Scwrl_1EBB.pdb
: