Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFI------RDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
3WHC Chain:A ((10-168))
-------------QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELR-QKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WHC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83950 for 1070 contacts (-78.5/contact) +
2D Compatibility (PS) -16384 + (NN) -7061 + (LL) 2704
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -117041.0 ( -109.38 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3WHC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WHC-query.scw
PDB file :
Tito_Scwrl_3WHC.pdb
: