Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKAGTH
3Q9M Chain:A ((21-171))
------IEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEMYK----
General information:
TITO was launched using:
RESULT:
Template:
3Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34446 for 1118 contacts (-30.8/contact) +
2D Compatibility (PS) -16569 + (NN) -11170 + (LL) 556
1D Compatibility (HY) -14800 + (ID) 3750
Total energy: -80179.0 ( -71.72 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9M-query.scw
PDB file :
Tito_Scwrl_3Q9M.pdb
: