Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGVLVAAATPIISSASATPANIAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTN-SGYPEHTFTWETGLRLRAALNA-LGVRTALSRGNDNALGPCVDERANMANALRPNAIVSLHADGGPA--SGRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQA-SGIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQGQAR
4RN7 Chain:A ((1-186))
-----------------------SNAYTVFIDPGHGGND--------------------KGTESKTSNRYEKDLNLQIAKKLANKLSKQKDIQVVVSRTDDTYI--SLKDRAILANNSSADVLVSIHLNAEKNGNTATGIETWYRNKAT-----DGSKELAQTVQSTIVSYVKVR------DRGIVE-NNFEVLRESNMPAILIECGFLTTPSEEQKIINEKYQDQLAEGIVQGVLSYLDSKG---
General information:
TITO was launched using:
RESULT:
Template:
4RN7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60185 for 1534 contacts (-39.2/contact) +
2D Compatibility (PS) -20362 + (NN) -13827 + (LL) 3196
1D Compatibility (HY) -10400 + (ID) 2100
Total energy: -103678.0 ( -67.59 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4RN7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RN7-query.scw
PDB file :
Tito_Scwrl_4RN7.pdb
: