Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
3TP0 Chain:A ((24-214))
-----------------------DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAEN---TDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
3TP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108195 for 1381 contacts (-78.3/contact) +
2D Compatibility (PS) -20594 + (NN) -17010 + (LL) 772
1D Compatibility (HY) -24800 + (ID) 9400
Total energy: -179227.0 ( -129.78 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3TP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TP0-query.scw
PDB file :
Tito_Scwrl_3TP0.pdb
: