Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGL-PAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIA-KARDNAQAVKDVLALCGELAEGVRNAR
2DZT Chain:A ((6-239))
-----------------SLIPYLTAGDPDKQSTLNFLLALDEYAGA--IELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRR-HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVAGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI--------
General information:
TITO was launched using:
RESULT:
Template:
2DZT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178317 for 1947 contacts (-91.6/contact) +
2D Compatibility (PS) -25635 + (NN) -18564 + (LL) 2240
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -244776.0 ( -125.72 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2DZT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZT-query.scw
PDB file :
Tito_Scwrl_2DZT.pdb
: