Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRD---GAQSTRVLEGEAAGCLMNIIHR-LIAG-AEPVEALLFHAGVEGMPVGLGERGEMPDA
1DGW Chain:A ((39-122))
-----------------------------------------------RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILV-LVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKR
General information:
TITO was launched using:
RESULT:
Template:
1DGW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30240 for 509 contacts (-59.4/contact) +
2D Compatibility (PS) -7672 + (NN) 5913 + (LL) 1796
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -32353.0 ( -63.56 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1DGW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DGW-query.scw
PDB file :
Tito_Scwrl_1DGW.pdb
: