Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKP-GYRCAPINLGANTDPYQPLERERRLTRQVLEVLLR-FRHPLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLSGNGIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF |
| 3T7V Chain:A ((61-236)) | --------------------------------------------------------------LNCFIYFSTYCKNQCSFCYYNCRNEIN--RYRL-----------TMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDP--NRFVELVQIVKEELGLPIMI--SPGLMDN--ATLLKAREKGANFLALYQETYDTELYRKLRVG-QSFDGRVNARRFAKQQGYCVEDGILTGVGN-DIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T7V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98205 for 1333 contacts (-73.7/contact) +
2D Compatibility (PS) -19276 + (NN) -14081 + (LL) 4288
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -133424.0 ( -100.09 by residue)
QMean score : 0.471
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