Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDVDNFDARLKAMKPRVAFNVPNVLTGEGNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALASAPKPKDDEPQA
2HC5 Chain:A ((45-111))
-------------------------------------------------------------------GEMNKLLEPSQVHLKFELHDKL---NEYYVKV-----IEDSTNEVIREIPP-KRWLDFYAAMTEFLGLFVDEKKLEHHHHHH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2HC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11739 for 363 contacts (-32.3/contact) +
2D Compatibility (PS) -7225 + (NN) -3998 + (LL) 7924
1D Compatibility (HY) -6000 + (ID) 450
Total energy: -21488.0 ( -59.20 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_2HC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HC5-query.scw
PDB file :
Tito_Scwrl_2HC5.pdb
: