Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLYRLHEADLEIPDAWQDQ---SI----NIFKLPASGPAREASFVISRDASQ-----GDAPFADYVARQLENAEKQ-LPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHH-EPAWKQAMQTLVPRPTPS
1V2B Chain:A ((11-177))
--TYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDA---TSNVIVAITPTDKKSITDFGSPEQFLSQVDYLL---AVAIANVLETSTAEVGGKQYYYLSILTRT--GGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA----
General information:
TITO was launched using:
RESULT:
Template:
1V2B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53736 for 955 contacts (-56.3/contact) +
2D Compatibility (PS) -13953 + (NN) -2765 + (LL) 328
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -72576.0 ( -76.00 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_1V2B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V2B-query.scw
PDB file :
Tito_Scwrl_1V2B.pdb
: